| Protein ZmGBP19 | |
|---|---|
|
ZmGBP19 is a protein in the GeBP family.
|
|
| Information | |
| TF Name: | ZmGBP19 |
| Species: | Maize |
| TF Family: | GeBP |
| Gene Name(Synonym): | GBPTF19 |
| Uniprot ID: | B4FPM7 |
Protein ZmGBP19
ZmGBP19 is a protein in the GeBP family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF04504 | |
| Zm00001eb213600_T002 |  |
| Zm00001eb213600_T001 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d013138 | DAPseq |  |
sequence | fimo | position |
| Zm00001d013138 | DAPseq |  |
sequence | fimo | position |
| Zm00001d013138 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d013138 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmGBP19 is the regulator
Interactions where ZmGBP19 is the target
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Zm00001eb213600_T002 from maize genome v5
Amino Acid Sequence
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MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF04504 |
|
| PF04504 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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GCCTTGTCTACCGTTCAAGCCCAAA...
GCCTTGTCTACCGTTCAAGCCCAAACGAAAAAAAAAACAAAAAAAAACTCAAACCATAGCTTCGTAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGATGACATCGGAGGAGCACCCCTCGTCTGCGTCCTCGGACGGCAGCACCACCATCGGCTCCGACGAACATCTTGACCCCTCGCCATCACCTTCGACGTCCTTCGACTCTCCTCCTGAATCCGACGACTCCGCCGCCTCCTCGCTGCTCTCAGACGGCTCTTCAGAGTCCGAGCCCATCATTTTCAAGAAACCCCGCCCACCCGTGCGCTCGTGGCCGGCCTCCGACGAGATCGCGATCCTCGAGACCGTCGCGTCGCACCGGCAGAAGCACGGGCGACTTCCCCTGGCAGACGACCTCGCCGCCGCGGTGCGGGGCCGCCTCAGCGTGGGGGACCGCCTCAGCGCCGCGCAGATCACCAGGCGGCTGTGCGCGCTCCGCAACCGGTACGACAACACCGTTATCCGCCTCAAACGCGGCACGATCCCGGCGAAGGACAGCGACGTCACCATCTACAGGCTCTCCAAGCTCATCTGGGAGGGCACGCGCAGGGGGAGGATAGAGAAGAAGACCCGTGTGCCCGACGCGCGCAATGACCCAAGAGGGTTCGACGATCTGGCCGAGCTGTACCCTTGCCTCTCCGCGGAGGTGGAGGCGATTGGTGCGAGGTGCGGCTACGGGGCGCTGAAGAGGGCATTCGGGCGCATCGGTGACGACACGGCGGCGCGGCTGGAGGCGAAGCTGAAGAGGCAGCGGATGGCGGAGACCAGGGCGAGCGGAAAGCTTGACCGGCTGAGGTCGAGAGTCGCCAATGCGCTTCAGGGATTTAACAAGTGAAATGAAGTGGCGGACTTTGTTGAAGGAGCTGAACGTGGACGTCTGGAGGATTATTAGACAATAGACACGCCAAGTGAAAGTGGCTTTAAGATTTTGTCAAGGAGAGGAAGCTACATAACATGGAGGACTTGCTTTGATGTTCTGCTTAGGTTCTATTTGGGACTGATCTAACTTTAAAAAATTAATTTGGTGGAGCTGGCATAGCAGGTTATTAGGTTTATTAGGTGATCCAGAAAATCCTAGACCTGCAGAACCTTTAGAAAATATCTTGATAAGTCATTTTATTTATATTTTAGATTAAAAATATATTTAAATTTATATTATAAACTACAACCCCAAGCTAAAGTTGGAACATGGAGCAATCATAAACACCCCTTT
GRMZM5G868875_T01 from maize genome v3
Amino Acid Sequence
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MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
Nucleotide Sequence
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GCCTTGTCTACCGTTCAAGCCCAAA...
GCCTTGTCTACCGTTCAAGCCCAAACGAAAAAAAAAACAAAAAAAAACTCAAACCATAGCTTCGTAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGATGACATCGGAGGAGCACCCCTCGTCTGCGTCCTCGGACGGCAGCACCACCATCGGCTCCGACGAACATCTTGACCCCTCGCCATCACCTTCGACGTCCTTCGACTCTCCTCCTGAATCCGACGACTCCGCCGCCTCCTCGCTGCTCTCAGACGGCTCTTCAGAGTCCGAGCCCATCATTTTCAAGAAACCCCGCCCACCCGTGCGCTCGTGGCCGGCCTCCGACGAGATCGCGATCCTCGAGACCGTCGCGTCGCACCGGCAGAAGCACGGGCGACTTCCCCTGGCAGACGACCTCGCCGCCGCGGTGCGGGGCCGCCTCAGCGTGGGGGACCGCCTCAGCGCCGCGCAGATCACCAGGCGGCTGTGCGCGCTCCGCAACCGGTACGACAACACCGTTATCCGCCTCAAACGCGGCACGATCCCGGCGAAGGACAGCGACGTCACCATCTACAGGCTCTCCAAGCTCATCTGGGAGGGCACGCGCAGGGGGAGGATAGAGAAGAAGACCCGTGTGCCCGACGCGCGCAATGACCCAAGAGGGTTCGACGATCTGGCCGAGCTGTACCCTTGCCTCTCCGCGGAGGTGGAGGCGATTGGTGCGAGGTGCGGCTACGGGGCGCTGAAGAGGGCATTCGGGCGCATCGGTGACGACACGGCGGCGCGGCTGGAGGCGAAGCTGAAGAGGCAGCGGATGGCGGAGACCAGGGCGAGCGGAAAGCTTGACCGGCTGAGGTCGAGAGTCGCCAATGCGCTTCAGGGATTTAACAAGTGAAATGAAGTGGCGGACTTTGTTGAAGGAGCTGAACGTGGACGTCTGGAGGATTATTAGACAATAGACACGCCAAGTGAAAGTGGCTTTAAGATTTTGTCAAGGAGAGGAAGCTACATAACATGGAGGACTTGCTTTGATGTTCTGCTTAGGTTCTATTTGGGACTGATCTAACTTTAAAAAATTAATTTGGTGGAGCTGGCATAGCAGGTTATTAGGTTTATTAGGTGATCCAGAAAATCCTAGACCTGCAGAACCTTTAGAAAATATCTTGATAAGTCATTTTATTTATATTTTAGATTAAAAATATATTTAAATTTATATTATAAACTACAACCCCAAGCTAAAGTTGGAACATGGAGCAATCATAAACACCCCTTT
GRMZM5G868875_T02 from maize genome v3
Amino Acid Sequence
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MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
Nucleotide Sequence
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GCCTTGTCTACCGTTCAAGCCCAAA...
GCCTTGTCTACCGTTCAAGCCCAAACGAAAAAAAAAACAAAAAAAAACTCAAACCATAGCTTCGTAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGATGACATCGGAGGAGCACCCCTCGTCTGCGTCCTCGGACGGCAGCACCACCATCGGCTCCGACGAACATCTTGACCCCTCGCCATCACCTTCGACGTCCTTCGACTCTCCTCCTGAATCCGACGACTCCGCCGCCTCCTCGCTGCTCTCAGACGGCTCTTCAGAGTCCGAGCCCATCATTTTCAAGAAACCCCGCCCACCCGTGCGCTCGTGGCCGGCCTCCGACGAGATCGCGATCCTCGAGACCGTCGCGTCGCACCGGCAGAAGCACGGGCGACTTCCCCTGGCAGACGACCTCGCCGCCGCGGTGCGGGGCCGCCTCAGCGTGGGGGACCGCCTCAGCGCCGCGCAGATCACCAGGCGGCTGTGCGCGCTCCGCAACCGGTACGACAACACCGTTATCCGCCTCAAACGCGGCACGATCCCGGCGAAGGACAGCGACGTCACCATCTACAGGCTCTCCAAGCTCATCTGGGAGGGCACGCGCAGGGGGAGGATAGAGAAGAAGACCCGTGTGCCCGACGCGCGCAATGACCCAAGAGGGTTCGACGATCTGGCCGAGCTGTACCCTTGCCTCTCCGCGGAGGTGGAGGCGATTGGTGCGAGGTGCGGCTACGGGGCGCTGAAGAGGGCATTCGGGCGCATCGGTGACGACACGGCGGCGCGGCTGGAGGCGAAGCTGAAGAGGCAGCGGATGGCGGAGACCAGGGCGAGCGGAAAGCTTGACCGGCTGAGGTCGAGAGTCGCCAATGCGCTTCAGGGATTTAACAAGTGAAATGGTGATTTCTTCATCTTCTTTCTGTTGCTACATGGGTTGGCGTAGAAAGACACAGTAAGATTGGTTCCTTCGCATGGTTTCATGGTTGAAATGTTATCAGATTCTCTGTGGCAAGTTTGAGGGCACTATCAACTGCAAAGAATCTGAAATGTCATGCTGTC
Zm00001d013138_T001 from maize genome v4
Amino Acid Sequence
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MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIPAKDSDVTIYRLSKLIWEG
TRRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAEVEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGK
LDRLRSRVANALQGFNK
Nucleotide Sequence
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ATGACATCGGAGGAGCACCCCTCGT...
ATGACATCGGAGGAGCACCCCTCGTCTGCGTCCTCGGACGGCAGCACCACCATCGGCTCCGACGAACATCTTGACCCCTCGCCATCACCTTCGACGTCCTTCGACTCTCCTCCTGAATCCGACGACTCCGCCGCCTCCTCGCTGCTCTCAGACGGCTCTTCAGAGTCCGAGCCCATCATTTTCAAGAAACCCCGCCCACCCGTGCGCTCGTGGCCGGCCTCCGACGAGATCGCGATCCTCGAGACCGTCGCGTCGCACCGGCAGAAGCACGGGCGACTTCCCCTGGCAGACGACCTCGCCGCCGCGGTGCGGGGCCGCCTCAGCGTGGGGGACCGCCTCAGCGCCGCGCAGATCACCAGGCGGCTGTGCGCGCTCCGCAACCGGTACGACAACACCGTTATCCGCCTCAAACGCGGCACGATCCCGGCGAAGGACAGCGACGTCACCATCTACAGGCTCTCCAAGCTCATCTGGGAGGGCACGCGCAGGGGGAGGATAGAGAAGAAGACCCGTGTGCCCGACGCGCGCAATGACCCAAGAGGGTTCGACGATCTGGCCGAGCTGTACCCTTGCCTCTCCGCGGAGGTGGAGGCGATTGGTGCGAGGTGCGGCTACGGGGCGCTGAAGAGGGCATTCGGGCGCATCGGTGACGACACGGCGGCGCGGCTGGAGGCGAAGCTGAAGAGGCAGCGGATGGCGGAGACCAGGGCGAGCGGAAAGCTTGACCGGCTGAGGTCGAGAGTCGCCAATGCGCTTCAGGGATTTAACAAGTGA
Zm00001eb213600_T001 from maize genome v5
Amino Acid Sequence
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MTSEEHPSSASSDGSTTIGSDEHLDPSPSPSTSFDSPPESDDSAASSLLSDGSSESEPIIFKKPRPPVRSWPASDEIAIL
ETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRGRIEKKTRVPDARNDPRGFDDLAELYPCLSAE
VEAIGARCGYGALKRAFGRIGDDTAARLEAKLKRQRMAETRASGKLDRLRSRVANALQGFNK
Nucleotide Sequence
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GCCTTGTCTACCGTTCAAGCCCAAA...
GCCTTGTCTACCGTTCAAGCCCAAACGAAAAAAAAAACAAAAAAAAACTCAAACCATAGCTTCGTAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGATGACATCGGAGGAGCACCCCTCGTCTGCGTCCTCGGACGGCAGCACCACCATCGGCTCCGACGAACATCTTGACCCCTCGCCATCACCTTCGACGTCCTTCGACTCTCCTCCTGAATCCGACGACTCCGCCGCCTCCTCGCTGCTCTCAGACGGCTCTTCAGAGTCCGAGCCCATCATTTTCAAGAAACCCCGCCCACCCGTGCGCTCGTGGCCGGCCTCCGACGAGATCGCGATCCTCGAGACCGTCGCGTCGCACCGGCAGAAGCACGGGCGACTTCCCCTGGCAGACGACCTCGCCGCCGCGGTGCGGGGCCGCCTCAGCGTGGGGGACCGCCTCAGCGCCGCGCAGATCACCAGGCGGCTGTGCGCGCTCCGCAACCGGGGGAGGATAGAGAAGAAGACCCGTGTGCCCGACGCGCGCAATGACCCAAGAGGGTTCGACGATCTGGCCGAGCTGTACCCTTGCCTCTCCGCGGAGGTGGAGGCGATTGGTGCGAGGTGCGGCTACGGGGCGCTGAAGAGGGCATTCGGGCGCATCGGTGACGACACGGCGGCGCGGCTGGAGGCGAAGCTGAAGAGGCAGCGGATGGCGGAGACCAGGGCGAGCGGAAAGCTTGACCGGCTGAGGTCGAGAGTCGCCAATGCGCTTCAGGGATTTAACAAGTGAAATGAAGTGGCGGACTTTGTTGAAGGAGCTGAACGTGGACGTCTGGAGGATTATTAGACAATAGACACGCCAAGTGAAAGTGGCTTTAAGATTTTGTCAAGGAGAGGAAGCTACATAACATGGAGGACTTGCTTTGATGTTCTGCTTAGGTTCTATTTGGGACTGATCTAACTTTAAAAAATTAATTTGGTGGAGCTGGCATAGCAGGTTATTAGGTTTATTAGGTGATCCAGAAAATCCTAGACCTGCAGAACCTTTAGAAAATATCTTGATAAGTCATTTTATTTATATTTTAGATTAAAAATATATTTAAATTTATATTATAAACTACAACCCCAAGCTAAAGTTGGAACATGGAGCAATCATAAACACCCCTTT
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